Course description in a few lines.
In this course you’ll build your own toolkit of useful programs with which you can read, transform and analyse data that you might find in various scientific areas. After this course we envision that you:
- you can read data into your programs from several structured standard formats
- you can transform data into a form suitable for further analysis by combining basic operators
- you can build meaningful visualizations of your data
- you understand how to write programs that are easy to understand for yourself and other programmers
- you are aware of the many tools that can help you with version management, correctness testing and performing code reviews
This course assumes that you finished the courses Scientific Programming 1 and 2.
Other than that, some modules assume high school mathematics or physics, but many do not. If you feel overwhelmed, don’t hesitate to contact the course staff! We can explain the course’s philosophy and requirements, and make recommendations on how to approach problems.
Passing the course
The course consists of two parts. In the first part of the course you will complete a number of programming assignments. In the second part you will work on your own (final) project.
You pass the course by: 1. submitting sufficient coursework 2. finishing the final project
Your grade will be determined by your final project. We will evaluate the following criteria:
- Process book (20%)
- It should be documented what challenges you faced during the project and how you solved these challenges
- Code quality (30%)
- Your code should be nicely formatted and commented
- Your readme file should be clear and describe what every file does and how to run your code
- Final product (50%)
- Description of the pipeline of the project
- Visualization itself
- Description of the visualization
In this course you’ll mostly work on assignments independently. But you’re not on your own! We’re here to help. There are two ways you can get help:
- Online lab-sessions: We have created an online classroom on wonder.me. In this classroom you can get help from us (and from your fellow students). We will be available at the office-hours mentioned here below. But you can log into the classroom at any time. So also outside of the office hours, you can use the classroom to meet up with other students.
- You can also ask questions on Ed, an online discussion platform. You can use this to sign up link: sign up for the Scientific Programming forum. Try to formulate your question clearly. Use code fragments to illustrate the problem. But, never copy your entire code here (this would make it too tempting for your fellow students to copy your code).
There are four moments in the week that there is help available on wonder.me:
|09:00 - 12:00||✓||✓|
|14:00 - 17:00||✓||✓|
Sufficient coursework means submitting a proper solution to each module.
You may not re-submit (variations of) solutions that you wrote for any other course’s problems. In case you have done similar assignments before, discuss with the course staff whether this is the right course for you.
Deadlines for each level are listed below. Only by agreement in advance is it possible to extend these deadlines. Send an e-mail detailing your plans to the course staff at email@example.com and we will consider your proposal.
Start February 2021
|Finish course in:||16 weeks|
|Acquisition||Fri 12 Feb 2021|
|Transformation||Fri 26 Feb 2021|
|Visualization||Fri 12 Mar 2021|
|Final Project||Wed 19 May 2021|
Start April (/end of March) 2021
|Finish course in:||8 weeks|
|Acquisition||Tue 06 Apr 2021|
|Transformation||Fri 16 Apr 2021|
|Visualization||Fri 23 Apr 2021|
|Final Project||Thu 20 May 2021|
Programming is like writing. You can gradually learn to write programs that are more beautiful, functional, short, elegant or simple. To learn this, you’ll need some feedback, and it’s mostly up to you to get it. You can show your programs in class to fellow students or your teacher; you can post a fragment of your code on Stack Overflow and ask for advice on improving; or you can send the staff an e-mail and we’ll have a look (this might take a while though!).
Doing your own work
This course’s philosophy on academic honesty is best stated as “be reasonable.” The course recognizes that interactions with classmates and others can facilitate mastery of the course’s material. However, there remains a line between enlisting the help of another and submitting the work of another. This policy characterizes both sides of that line.
The essence of all work that you submit to this course must be your own. Collaboration on problem sets is not permitted except to the extent that you may ask classmates and others for help so long as that help does not reduce to another doing your work for you. Generally speaking, when asking for help, you may show your code to others, but you may not view theirs, so long as you and they respect this policy’s other constraints. Collaboration on the course’s test and quiz is not permitted at all.
Below are rules of thumb that (inexhaustively) characterize acts that the course considers reasonable and not reasonable. If in doubt as to whether some act is reasonable, do not commit it until you solicit and receive approval in writing from the course’s heads. Acts considered not reasonable by the course are handled harshly.
Communicating with classmates about problem sets’ problems in English (or some other spoken language).
Discussing the course’s material with others in order to understand it better.
Helping a classmate identify a bug in his or her code at office hours, elsewhere, or even online, as by viewing, compiling, or running his or her code, even on your own computer.
Incorporating a few lines of code that you find online or elsewhere into your own code, provided that those lines are not themselves solutions to assigned problems and that you cite the lines’ origins.
Reviewing past semesters’ quizzes and solutions thereto.
Sending or showing code that you’ve written to someone, possibly a classmate, so that he or she might help you identify and fix a bug.
Sharing a few lines of your own code online so that others might help you identify and fix a bug.
Turning to the course’s heads for help or receiving help from the course’s heads during the quiz or test.
Turning to the web or elsewhere for instruction beyond the course’s own, for references, and for solutions to technical difficulties, but not for outright solutions to problem set’s problems or your own final project.
Whiteboarding solutions to problem sets with others using diagrams or pseudocode but not actual code.
Working with (and even paying) a tutor to help you with the course, provided the tutor does not do your work for you.
Accessing a solution to some problem prior to (re-)submitting your own.
Asking a classmate to see his or her solution to a problem set’s problem before (re-)submitting your own.
Decompiling, deobfuscating, or disassembling the staff’s solutions to problem sets.
Failing to cite (as with comments) the origins of code or techniques that you discover outside of the course’s own lessons and integrate into your own work, even while respecting this policy’s other constraints.
Giving or showing to a classmate a solution to a problem set’s problem when it is he or she, and not you, who is struggling to solve it.
Looking at another individual’s work during the test or quiz.
Paying or offering to pay an individual for work that you may submit as (part of) your own.
Providing or making available solutions to problem sets to individuals who might take this course in the future.
Searching for or soliciting outright solutions to problem sets online or elsewhere.
Splitting a problem set’s workload with another individual and combining your work.
Submitting (after possibly modifying) the work of another individual beyond the few lines allowed herein.
Submitting the same or similar work to this course that you have submitted or will submit to another.
Submitting work to this course that you intend to use outside of the course (e.g., for a job) without prior approval from the course’s heads.
Turning to humans (besides the course’s heads) for help or receiving help from humans (besides the course’s heads) during the quiz or test.
Viewing another’s solution to a problem set’s problem and basing your own solution on it.
This course has been designed by Marleen Rijksen, Wouter Vrielink, Tim Doolan, Martijn Stegeman, and Simon Pauw.
This work is partially based on many great programming resources that have been published as Open Courseware under a Creative Commons license. The resulting work itself is also published under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. Feel free to re-use! If you would like to use the work commercially, please send an e-mail for arranging a license.